tracking_reconstruction.xml.in

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<Request>
  <Email email="%user%@jlab.org" request="false" job="false"/>
  <Project name="qweak"/>
  <Track name="simulation"/>
  <Name name="%name%_%jobid%"/>
  <OS name="centos7"/>
  <Command><![CDATA[
set file=`echo %dest%/%user%/rootfiles/%name%/%name%_%jobid%_tracking.root | sed 's|mss:||g'`
if ( -f $file ) exit 0

date | tee -a /home/%user%/scratch/job/%name%_%jobid%.stat
ls -al $WORKDIR | tee -a /home/%user%/scratch/job/%name%_%jobid%.stat

# Change to QwAnalysis directory
cd %qwanalysis%
setenv QWSCRATCH %qwscratch%
setenv QWANALYSIS %qwanalysis%
source SetupFiles/SET_ME_UP.csh
setenv QW_DATA      $WORKDIR/data
setenv QW_ROOTFILES $WORKDIR/rootfiles
mkdir -p $QW_DATA $QW_ROOTFILES
ln -sf $WORKDIR/%name%_%jobid%_simulation.root $QW_DATA/QwSim_%jobid%.root
bin/qwsimtracking -r %jobid% --R2-octant %R2pkg2% --R3-octant %R3pkg2% %qwsimtrackingflag%
mv $QW_ROOTFILES/QwSim_%jobid%.root $WORKDIR/%name%_%jobid%_tracking.root

date | tee -a /home/%user%/scratch/job/%name%_%jobid%.stat
ls -al $WORKDIR     | tee -a /home/%user%/scratch/job/%name%_%jobid%.stat
ls -al %qwanalysis% | tee -a /home/%user%/scratch/job/%name%_%jobid%.stat
  ]]></Command>

  <Memory space="1800" unit="MB"/>
  <TimeLimit unit="minutes" time="4320"/>

  <Job>
    <Input src="%dest%/%user%/rootfiles/%name%/%name%_%jobid%_simulation.root" dest="%name%_%jobid%_simulation.root"/>
    <Output src="%name%_%jobid%_tracking.root"   dest="%dest%/%user%/rootfiles/%name%/%name%_%jobid%_tracking.root"/>
    <Stdout dest="/home/%user%/scratch/job/%name%_%jobid%.out"/>
    <Stderr dest="/home/%user%/scratch/job/%name%_%jobid%.err"/>
  </Job>

</Request>